Mir-188-P3

MirGeneDB ID

Hsa-Mir-188-P3

Family name

MIR-188 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-660

Paralogues

Hsa-Mir-188-P1 Hsa-Mir-188-P2

Orthologues

Bta-Mir-188-P3 Cfa-Mir-188-P3 Cja-Mir-188-P3 Cpo-Mir-188-P3 Dno-Mir-188-P3 Eca-Mir-188-P3 Ete-Mir-188-P3 Laf-Mir-188-P3 Mml-Mir-188-P3 Mmr-Mir-188-P3 Ocu-Mir-188-P3 Pab-Mir-188-P3

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 50013256-50013314 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P3)

Mir-188-P1 chrX: 50003167-50003225 [+] UCSC Ensembl
Mir-188-P2 chrX: 50003517-50003576 [+] UCSC Ensembl
Mir-362-P3a-v1 chrX: 50008443-50008504 [+] UCSC Ensembl
Mir-362-P3a-v2 chrX: 50008443-50008504 [+] UCSC Ensembl
Mir-362-P4 chrX: 50008968-50009026 [+] UCSC Ensembl
Mir-362-P5 chrX: 50009735-50009794 [+] UCSC Ensembl
Mir-362-P3b chrX: 50010681-50010742 [+] UCSC Ensembl
Mir-188-P3 chrX: 50013256-50013314 [+] UCSC Ensembl
Mir-362-P6 chrX: 50014612-50014671 [+] UCSC Ensembl

Seed

ACCCAUU

Precursor
(pre-Mir +30nt flank)

GUGCAGAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGGUGAGCCUUGUCAUCGUGAAUCUUC

Get precursor sequence

Structure

        10          20        30         40        50         
GUGCAGAAGAAUGAACU--    C      CAUAC-|   U      C    U   GAAUU 
                   GCUC UUCUCC      CCAU GCAUAU GGAG UGU     \
                   CGAG GGGAGG      GGUA CGUGUG CCUC ACA     C
CUUCUAAGUGCUACUGUUC    U      ACAUUA^   -      U    C   AAACU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-188-P3_5p

mirBase accession

MIMAT0003338

Sequence

0- UACCCAUUGCAUAUCGGAGUUGU -23

Get sequence

Proposed targets

microrna.org: MIMAT0003338
TargetScanVert: hsa-miR-660-5p
TargetMiner: hsa-miR-660-5p
miRDB: MIMAT0003338

Star sequence

Hsa-Mir-188-P3_3p*

mirBase accession

MIMAT0022711

Sequence

36- ACCUCCUGUGUGCAUGGAUUACA -59

Get sequence

Proposed targets

TargetScanVert: hsa-miR-660-3p
TargetMiner: hsa-miR-660-3p
miRDB: MIMAT0022711