Mir-452

MirGeneDB ID

Laf-Mir-452

Family name

MIR-452 (all species)

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-452-v1 Cfa-Mir-452-v1 Cja-Mir-452-v1 Cpo-Mir-452-v1 Ete-Mir-452-v1 Hsa-Mir-452-v1 Mml-Mir-452-v1 Mmr-Mir-452-v1 Mmu-Mir-452-v1 Ocu-Mir-452-v1 Pab-Mir-452-v1 Rno-Mir-452-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010138.1: 2359494-2359558 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-452)

Mir-224 GL010138.1: 2358421-2358489 [-] UCSC Ensembl
Mir-452 GL010138.1: 2359494-2359558 [-] UCSC Ensembl

Seed

ACUGUUU

Precursor
(pre-Mir +30nt flank)

GCUCCUGUCUUGUAAAUGCUAAGCACUUACAACUGUUUGCAGAGGAAACUGAGACUUUGUAGCUAUGUCUCAGUCUCAUCUGCAAAGAAGUAAGUGCUUUGCCAAGCCCCGGAAAGGGUAGGUAA

Get precursor sequence

Structure

        10              20        30        40        50        60 
GCUCCUGUCUUGUAAAU------| U          AA  GU       G  A       CUUUGU 
                       GC AAGCACUUAC  CU  UUGCAGA GA ACUGAGA      \
                       CG UUCGUGAAUG  GA  AACGUCU CU UGACUCU      A
AAUGGAUGGGAAAGGCCCCGAAC^ U          AA  --       A  C       GUAUCG 
   120       110       100        90          80        70

Deep sequencing

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Wh

Mature sequence

Laf-Mir-452_5p (predicted)

mirBase accession

None

Sequence

0- AACUGUUUGCAGAGGAAACUGAGA -24

Get sequence

Star sequence

Laf-Mir-452_3p*

mirBase accession

None

Sequence

39- UCAGUCUCAUCUGCAAAGAAGUAAGU -65

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