| MirGeneDB ID | Laf-Mir-504 |
|---|
| Family name |
MIR-504 (all species) |
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| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-504-v1
Cfa-Mir-504-v1
Cja-Mir-504-v1
Cpo-Mir-504-v1
Dno-Mir-504-v1
Eca-Mir-504-v1
Ete-Mir-504-v1
Hsa-Mir-504-v1
Mml-Mir-504-v1
Mmr-Mir-504-v1
Mmu-Mir-504-v1
Ocu-Mir-504-v1
Pab-Mir-504-v1
Rno-Mir-504-v1
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010116.1: 2513706-2513765 [+]
UCSC
Ensembl
|
|---|
| Seed |
GACCCUG |
|---|
Precursor
(pre-Mir +30nt flank) |
AUGUGAAGUGAUGAAUCUGCUGCUGUUGGGAGACCCUGGUCUGCACUCUUAUCUGUAUGCUUACUGAGGGGAGAGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACCUGUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGUGAAGUGAUGAAUCU G- -| G A UA UGUAU
GCU CUGU UGGGAGACCCUG UCUGC CUCU UC G
CGG GACA ACCCUUUGGGAC GGACG GAGG AG C
GGUGUCCACCAUCGGACA GA U^ G A GG UCAUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Laf-Mir-504_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGACCCUGGUCUGCACUCUUAUC -23
Get sequence
|
|---|
| Star sequence |
Laf-Mir-504_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- GGGGAGAGCAGGGCAGGGUUUCC -60
Get sequence
|
|---|
