MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-504

Family name MIR-504 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-504
Paralogues
Orthologues Cfa-Mir-504-v1  Cja-Mir-504-v1  Cpo-Mir-504-v1  Dno-Mir-504-v1  Eca-Mir-504-v1  Ete-Mir-504-v1  Hsa-Mir-504-v1  Laf-Mir-504  Mml-Mir-504-v1  Mmr-Mir-504-v1  Mmu-Mir-504-v1  Ocu-Mir-504-v1  Pab-Mir-504-v1  Rno-Mir-504-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037357.1: 22089371-22089429 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v1)		 Mir-504-v1 NC_037357.1: 22089371-22089429 [-] UCSC Ensembl
Mir-504-v2 NC_037357.1: 22089372-22089428 [-] UCSC Ensembl
Variant

Bta-Mir-504-v1
Seed GACCCUG
Precursor
(pre-Mir +30nt flank)		 
AAGUGGAACGUUGACGAGGCUGCUGUUGGGAGACCCUGGUCUGCACUCUGUCUGUAUGCUUACUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCAACCACUGCAUG
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Structure
        10        20          30        40        50         
AAGUGGAACGUUGACGAG   G-    -            G     A    G-| UGUAU 
                  GCU  CUGU UGGGAGACCCUG UCUGC CUCU  UC     G
                  CGG  GACA ACCCUUUGGGAC GGACG GAGG  AG     C
GUACGUCACCAACGGACA   GA    U            G     C    GA^ UCAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-504-v1_5p
mirBase accessionMIMAT0009340
Sequence 
0- AGACCCUGGUCUGCACUCUGUCU -23
Get sequence
Proposed targets TargetScanVert: bta-miR-504
Star sequence

Bta-Mir-504-v1_3p*
mirBase accessionNone
Sequence 
36- AGGGAGCGCAGGGCAGGGUUUCC -59
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Variant

Bta-Mir-504-v2
Seed ACCCUGG
Precursor
(pre-Mir +30nt flank)		 
AGUGGAACGUUGACGAGGCUGCUGUUGGGAGACCCUGGUCUGCACUCUGUCUGUAUGCUUACUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCAACCACUGCAU
Get precursor sequence
Structure
        10         20         30        40         50       
AGUGGAACGUUGACGAGG-  G    -            G     A    G-| UGUAU 
                   CU CUGU UGGGAGACCCUG UCUGC CUCU  UC     G
                   GG GACA ACCCUUUGGGAC GGACG GAGG  AG     C
UACGUCACCAACGGACACG  A    U            G     C    GA^ UCAUU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-504-v2_5p
mirBase accessionMIMAT0009340
Sequence 
0- GACCCUGGUCUGCACUCUGUCU -22
Get sequence
Proposed targets TargetScanVert: bta-miR-504
Star sequence

Bta-Mir-504-v2_3p*
mirBase accessionNone
Sequence 
35- AGGGAGCGCAGGGCAGGGUUUC -57
Get sequence