| MirGeneDB ID | Laf-Mir-769-P1 |
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| Family name |
MIR-769 (all species) |
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| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
|
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| Paralogues |
Laf-Mir-769-P2
Laf-Mir-769-P3
|
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| Orthologues |
Bta-Mir-769
Cfa-Mir-769
Cja-Mir-769
Cpo-Mir-769
Dno-Mir-769
Ete-Mir-769
Hsa-Mir-769
Mml-Mir-769
Mmr-Mir-769
Pab-Mir-769
|
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| Node of Origin (locus) |
L. africana
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010031.1: 5172047-5172107 [+]
UCSC
Ensembl
|
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| Seed |
GAGACCU |
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Precursor
(pre-Mir +30nt flank) |
UGACUCGGUGCCGAUUCCUGGGCUCUGACCUGAGACCUCUGGGUUCUGAGCUGUGAUGUCGCUUCUGAGCUGGGAUCUCCGGGGUCUUGGUUCAGGGUCGGGGCCUGUGGGUUCCGAGAGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGACUCGGUGCCGAUUC--| G C UG U U G GUGAUGU
CU GGCUCUGA C AGACCUC GGG UCU AGCU \
GG CUGGGACU G UCUGGGG CUC AGG UCGA C
CGAGAGCCUUGGGUGUCCG^ G U GU C U G GUCUUCG
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Laf-Mir-769-P1_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGACCUCUGGGUUCUGAGCU -22
Get sequence
|
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| Star sequence |
Laf-Mir-769-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- CUGGGAUCUCCGGGGUCUUGGU -61
Get sequence
|
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