Mir-873

MirGeneDB ID

Laf-Mir-873

Family name

MIR-873 (all species)

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-873-v1 Cfa-Mir-873-v1 Cja-Mir-873-v1 Cpo-Mir-873-v1 Dno-Mir-873-v1 Eca-Mir-873-v1 Ete-Mir-873-v1 Hsa-Mir-873-v1 Mdo-Mir-873-v1 Mml-Mir-873-v1 Mmr-Mir-873 Mmu-Mir-873-v1 Neu-Mir-873-v1 Oan-Mir-873-v1 Ocu-Mir-873-v1 Pab-Mir-873-v1 Rno-Mir-873-v1

Node of Origin (locus)

Mammalia

Node of Origin (family)

Mammalia

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010033.1: 70558847-70558905 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-873)

Mir-873 GL010033.1: 70558847-70558905 [+] UCSC Ensembl
Mir-876-v2 GL010033.1: 70593767-70593829 [+] UCSC Ensembl
Mir-876-v1 GL010033.1: 70593769-70593827 [+] UCSC Ensembl

Seed

GCAGGAA

Precursor
(pre-Mir +30nt flank)

GUGCCUGUUUAAAAUACGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUACU

Get precursor sequence

Structure

        10          20        30        40        50         
GUGCCUGUUUAAAAUAC--|      UGCAUUUGCA      UG G        AUUGAA 
                   GUUUGUG          GGAACU  U AGUCUCCU      \
                   UAAACAC          CCUUGA  A UCAGAGGA      A
UCAUCUUUACUCAUCCUUC^      CCACAAGGGC      GU G        CAAGUA 
       110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Wh

Mature sequence

Laf-Mir-873_5p (predicted)

mirBase accession

None

Sequence

0- UGCAGGAACUUGUGAGUCUCCU -22

Get sequence

Star sequence

Laf-Mir-873_3p* (predicted)

mirBase accession

None

Sequence

37- GAGACUGAUGAGUUCCCGGGAA -59

Get sequence