Mir-34-P9

MirGeneDB ID

Lan-Mir-34-P9

Family name

MIR-34 (all species)

Species

Lingula (Lingula anatina)

MiRBase ID

Paralogues

Lan-Mir-34-P10

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Mgi-Mir-34 Mom-Mir-34 Npo-Mir-34 Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pau-Mir-34 Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Tca-Mir-34 Tur-Mir-34 War-Mir-34

Node of Origin (locus)

L. anatina

Node of Origin (family)

Bilateria

Genome context
(LinAna_1.0)

LFEI01002950: 2250-2306 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P9)

Mir-317-P10 LFEI01002950: 930-993 [+] Ensembl
Mir-277-P3 LFEI01002950: 1521-1587 [+] Ensembl
Mir-277-P4 LFEI01002950: 1829-1895 [+] Ensembl
Mir-34-P9 LFEI01002950: 2250-2306 [+] Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

CUCUCUCCACCAAGAACCUGCUCUCCUCUGUGGCAGUGUGGUUAGCUGGUUGAGUAUAUCCAGUCAACCGCUGACUACACUACCUUAGAGUGGAUCAACAUGGCUGCCAGAGAUUCA

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Structure

        10          20        30        40        50        
CUCUCUCCACCAAGAACC--| C  UC     U  C            U      GUAU 
                    UG UC  CUCUG GG AGUGUGGUUAGC GGUUGA    A
                    AC AG  GAGAU CC UCACAUCAGUCG CCAACU    U
ACUUAGAGACCGUCGGUACA^ U  GU     U  A            -      GACC 
     110       100        90        80        70         60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Mature sequence

Lan-Mir-34-P9_5p

mirBase accession

None

Sequence

0- UGGCAGUGUGGUUAGCUGGUUGA -23

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Star sequence

Lan-Mir-34-P9_3p*

mirBase accession

None

Sequence

35- AACCGCUGACUACACUACCUUA -57

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