| MirGeneDB ID | Lch-Mir-142-P2 |
|---|---|
| Family name | MIR-142 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-142-P4 |
| Orthologues | Ami-Mir-142-P2-v1 Bta-Mir-142-P2-v1 Cfa-Mir-142-P2-v1 Cja-Mir-142-P2-v1 Cli-Mir-142-P2-v1 Cmi-Mir-142-P2-v1 Cpi-Mir-142-P2-v1 Cpo-Mir-142-P2-v1 Dno-Mir-142-P2-v1 Dre-Mir-142-P2-v1 Eca-Mir-142-P2-v1 Ete-Mir-142-P2-v1 Gga-Mir-142-P2-v1 Gmo-Mir-142-P2-v1 Hsa-Mir-142-P2-v1 Loc-Mir-142-P2-v1 Mal-Mir-142-P2-v1 Mdo-Mir-142-P2-v1 Mml-Mir-142-P2-v1 Mmr-Mir-142-P2-v1 Mmu-Mir-142-P2-v1 Neu-Mir-142-P2-v1 Oan-Mir-142-P2-v1 Ocu-Mir-142-P2-v1 Pab-Mir-142-P2-v1 Rno-Mir-142-P2-v1 Sha-Mir-142-P2-v1 Spt-Mir-142-P2 Sto-Mir-142-P2-v1 Tgu-Mir-142-P2-v1 Tni-Mir-142-P2-v1 Xla-Mir-142-P2a1-v1 Xla-Mir-142-P2a2-v1 Xla-Mir-142-P2b1-v1 Xla-Mir-142-P2b2-v1 Xtr-Mir-142-P2a-v1 Xtr-Mir-142-P2b-v1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126681.1: 1642393-1642452 [+] Ensembl |
| Seed | AUAAAGU |
| Precursor (pre-Mir +30nt flank) |
GGACUCUUCAUGAUGUACAGUGGAGUCAUCCAUAAAGUAGAAAGCACUACUAAACUAAUCCACUCAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGCACUGUGGGCUUCUGAGAAGAAGAGet precursor sequence |
| Structure | 10 20 30 40 50 GGACUCUUCAUGAUGUA--| GAG A UAAACUAA CAGUG UCAUCCAUAAAGUAG AAGCACUAC U GUCAC AGUAGGUAUUUCAUC UUUGUGAUG C AGAAGAAGAGUCUUCGGGU^ GUG C UGACUCAC . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-142-P2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CAUAAAGUAGAAAGCACUACU -21
Get sequence
|
| Star sequence | Lch-Mir-142-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- UAGUGUUUCCUACUUUAUGGA -60
Get sequence
|
