| MirGeneDB ID | Tgu-Mir-142-P2 |
|---|---|
| Family name | MIR-142 (all species) |
| Species | Zebra finch (Taeniopygia guttata) |
| MiRBase ID | tgu-mir-142 |
| Paralogues | |
| Orthologues | Ami-Mir-142-P2-v1 Bta-Mir-142-P2-v1 Cfa-Mir-142-P2-v1 Cja-Mir-142-P2-v1 Cli-Mir-142-P2-v1 Cmi-Mir-142-P2-v1 Cpi-Mir-142-P2-v1 Cpo-Mir-142-P2-v1 Dno-Mir-142-P2-v1 Dre-Mir-142-P2-v1 Eca-Mir-142-P2-v1 Ete-Mir-142-P2-v1 Gga-Mir-142-P2-v1 Gmo-Mir-142-P2-v1 Hsa-Mir-142-P2-v1 Lch-Mir-142-P2 Loc-Mir-142-P2-v1 Mal-Mir-142-P2-v1 Mdo-Mir-142-P2-v1 Mml-Mir-142-P2-v1 Mmr-Mir-142-P2-v1 Mmu-Mir-142-P2-v1 Neu-Mir-142-P2-v1 Oan-Mir-142-P2-v1 Ocu-Mir-142-P2-v1 Pab-Mir-142-P2-v1 Rno-Mir-142-P2-v1 Sha-Mir-142-P2-v1 Spt-Mir-142-P2 Sto-Mir-142-P2-v1 Tni-Mir-142-P2-v1 Xla-Mir-142-P2a1-v1 Xla-Mir-142-P2a2-v1 Xla-Mir-142-P2b1-v1 Xla-Mir-142-P2b2-v1 Xtr-Mir-142-P2a-v1 Xtr-Mir-142-P2b-v1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (TaeGut1_add) |
|
| Variant | Tgu-Mir-142-P2-v1 |
| Seed | AUAAAGU |
| Precursor (pre-Mir +30nt flank) |
CAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGAGet precursor sequence |
| Structure | 10 20 --| A UAAACA A CAUAAAGUAG AAGCACUAC GC \ GUAUUUCAUC UUUGUGAUG CG C AG^ C UGGGA- U . 50 40 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Tgu-Mir-142-P2-v1_5p |
| mirBase accession | MIMAT0014554 |
| Sequence |
0- CAUAAAGUAGAAAGCACUACU -21
Get sequence
|
| Star sequence | Tgu-Mir-142-P2-v1_3p* |
| mirBase accession | MIMAT0026999 |
| Sequence |
39- UAGUGUUUCCUACUUUAUGGA -60
Get sequence
|
| Variant | Tgu-Mir-142-P2-v2 |
| Seed | UAGUGUU |
| Precursor (pre-Mir +30nt flank) |
CAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGAGet precursor sequence |
| Structure | 10 20 --| A UAAACA A CAUAAAGUAG AAGCACUAC GC \ GUAUUUCAUC UUUGUGAUG CG C AG^ C UGGGA- U . 50 40 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Tgu-Mir-142-P2-v2_5p* |
| mirBase accession | MIMAT0014554 |
| Sequence |
0- CAUAAAGUAGAAAGCACUACUA -22
Get sequence
|
| Mature sequence | Tgu-Mir-142-P2-v2_3p |
| mirBase accession | MIMAT0026999 |
| Sequence |
38- GUAGUGUUUCCUACUUUAUGGA -60
Get sequence
|
| Variant | Tgu-Mir-142-P2-v3 |
| Seed | GUAGUGU |
| Precursor (pre-Mir +30nt flank) |
CAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGAGet precursor sequence |
| Structure | 10 20 --| A UAAACA A CAUAAAGUAG AAGCACUAC GC \ GUAUUUCAUC UUUGUGAUG CG C AG^ C UGGGA- U . 50 40 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Tgu-Mir-142-P2-v3_5p* |
| mirBase accession | MIMAT0014554 |
| Sequence |
0- CAUAAAGUAGAAAGCACUACUAA -23
Get sequence
|
| Mature sequence | Tgu-Mir-142-P2-v3_3p |
| mirBase accession | MIMAT0026999 |
| Sequence |
37- UGUAGUGUUUCCUACUUUAUGGA -60
Get sequence
|
| Variant | Tgu-Mir-142-P2-v4 |
| Seed | CCAUAAA |
| Precursor (pre-Mir +30nt flank) |
CCCAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGAUGGet precursor sequence |
| Structure | 10 20 30 C--| A UAAACA A CCAUAAAGUAG AAGCACUAC GC \ GGUAUUUCAUC UUUGUGAUG CG C GUA^ C UGGGA- U 60 50 40 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Tgu-Mir-142-P2-v4_5p |
| mirBase accession | MIMAT0014554 |
| Sequence |
0- CCCAUAAAGUAGAAAGCACUAC -22
Get sequence
|
| Star sequence | Tgu-Mir-142-P2-v4_3p* |
| mirBase accession | MIMAT0026999 |
| Sequence |
42- AGUGUUUCCUACUUUAUGGAUG -64
Get sequence
|
