| MirGeneDB ID | Lch-Mir-2188 |
|---|---|
| Family name | MIR-2188 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-2188 Ami-Mir-2188 Cli-Mir-2188 Cmi-Mir-2188 Cpi-Mir-2188 Dre-Mir-2188 Gga-Mir-2188 Gja-Mir-2188 Gmo-Mir-2188 Loc-Mir-2188 Mal-Mir-2188 Mdo-Mir-2188 Mun-Mir-2188 Oan-Mir-2188 Pbv-Mir-2188 Sha-Mir-2188 Spt-Mir-2188 Sto-Mir-2188 Tgu-Mir-2188 Tni-Mir-2188 Xla-Mir-2188-P1 Xla-Mir-2188-P2 Xtr-Mir-2188 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Gnathostomata |
| Genome context (LatCha1_add) |
JH127420.1: 655957-656016 [+] Ensembl |
| Seed | AGGUCCA |
| Precursor (pre-Mir +30nt flank) |
UCCAUCCAGGAGAAUAUCAGACCUGUGGGAAAGGUCCAACCUCACAUGUCCUGUAUUAAAUAAGGAGGGAUAUAUGUGGUCAGACCUAUCCCACAGGCUCUGUAUUCUUACAUGCAUGCUGet precursor sequence |
| Structure | 10 20 30 40 50 UCCAUCCAGGAGAAUAU- -| A CA U C GUAUUA CAGA CCUGUGGGA AGGUC ACC CA AUGUCCU A GUCU GGACACCCU UCCAG UGG GU UAUAGGG A UCGUACGUACAUUCUUAU C^ A AC U A AGGAAU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Lch-Mir-2188_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AAGGUCCAACCUCACAUGUCCU -22
Get sequence
|
| Star sequence | Lch-Mir-2188_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- GAUAUAUGUGGUCAGACCUAUC -60
Get sequence
|
