MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-2188

Family name MIR-2188 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-2188  Ami-Mir-2188  Cli-Mir-2188  Cmi-Mir-2188  Cpi-Mir-2188  Dre-Mir-2188  Gga-Mir-2188  Gja-Mir-2188  Gmo-Mir-2188  Lch-Mir-2188  Loc-Mir-2188  Mal-Mir-2188  Mdo-Mir-2188  Mun-Mir-2188  Oan-Mir-2188  Pbv-Mir-2188  Spt-Mir-2188  Sto-Mir-2188  Tgu-Mir-2188  Tni-Mir-2188  Xla-Mir-2188-P1  Xla-Mir-2188-P2  Xtr-Mir-2188 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(DEVIL_add)		 GL834710.1: 2326740-2326799 [-] UCSC Ensembl
Seed UGUGUAU
Precursor
(pre-Mir +30nt flank)		 
UCCAUCAUGGGGAAUAUCAGACCUAUGGAAAAGGUCCAACUUCACAUGGCCUGUAUGUCAUAAAGAGGGUUGUGUAUGGUUGGGCCCAUCCCACAGGCCCUGUAUUCUUACACAUGUAGA
Get precursor sequence
Structure
        10         20         30        40        50         
UCCAUCAUGGGGAAUAU-   A-|  A   AAAA         UC   UG    GUAUGU 
                  CAG  CCU UGG    GGUCCAACU  ACA  GCCU      C
                  GUC  GGA ACC    CCGGGUUGG  UGU  UGGG      A
AGAUGUACACAUUCUUAU   CC^  C   CUAC         UA   GU    AGAAAU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe Dicer cut is -2 relative to Monodelphis.
3' NTU Yes
MotifsNo
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-2188_5p*
mirBase accessionNone
Sequence 
0- AAGGUCCAACUUCACAUGGCCU -22
Get sequence
Mature sequence

Sha-Mir-2188_3p
mirBase accessionNone
Sequence 
39- UUGUGUAUGGUUGGGCCCAUC -60
Get sequence