| MirGeneDB ID | Loc-Mir-460-P2 |
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| Family name |
MIR-460 (all species) |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
Loc-Mir-460-P1
|
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| Orthologues |
Aca-Mir-460-P2
Ami-Mir-460-P2
Cli-Mir-460-P2
Cpi-Mir-460-P2
Dre-Mir-460-P2
Gga-Mir-460-P2
Gja-Mir-460-P2
Gmo-Mir-460-P2
Lch-Mir-460-P2
Mal-Mir-460-P2
Mun-Mir-460-P2
Spt-Mir-460-P2
Tgu-Mir-460-P2
Tni-Mir-460-P2a
Tni-Mir-460-P2b
Xla-Mir-460-P2c
Xla-Mir-460-P2d
Xtr-Mir-460-P2
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| Node of Origin (locus) |
Osteichthyes
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| Node of Origin (family) |
Osteichthyes
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Genome context
(LepOcu1) |
LG7: 21682084-21682141 [-]
Ensembl
|
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| Seed |
CCUCAUU |
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Precursor
(pre-Mir +30nt flank) |
AGAAAGAAGAAUACAUAAGGCUUCACAGUUUCCUCAUUGUACAUGCUGUGUGCCUUCUCGGUACACGCACAGCGCAUACAAUGUGGACAUUGUGGGGUUCUGUCCAGCUUUGUUCAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAAAGAAGAAUACAUAA-| U U CA CCUUCU
GGCUUCACAGU UCC CAUUGUA UGCUGUGUG \
UUGGGGUGUUA AGG GUAACAU GCGACACGC C
UAACUUGUUUCGACCUGUC^ C U AC ACAUGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Mature sequence |
Loc-Mir-460-P2_5p |
| mirBase accession | None |
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| Sequence |
0- UCCUCAUUGUACAUGCUGUGUG -22
Get sequence
|
|---|
| Star sequence |
Loc-Mir-460-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CACAGCGCAUACAAUGUGGAC -58
Get sequence
|
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