| MirGeneDB ID | Mal-Mir-734 |
|---|
| Family name |
MIR-734 (all species) |
|---|
| Species |
Asian swamp eel (Monopterus albus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Dre-Mir-734
Gmo-Mir-734
Loc-Mir-734
|
|---|
| Node of Origin (locus) |
Neopterygii
|
|---|
| Node of Origin (family) |
Neopterygii
|
|---|
Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV884834.1: 618182-618241 [+]
UCSC
Ensembl
|
|---|
| Seed |
AAAUGCU |
|---|
Precursor
(pre-Mir +30nt flank) |
CUCACCACGCUGCCUUUGAUUUCAAGAGCUGAACUAUUCUGCAACAUUUGUUGAUGUGGUUCUGCAAGUAAAUGCUGCAGAAUUGUGCUCCUCUUGGAAUUGUUCUUCUUCGCAGACCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUCACCACGCUGCCUUU--| CUGA U A GAUGUG
GAUUUCAAGAG AC AUUCUGCA CAUUUGUU G
UUAAGGUUCUC UG UAAGACGU GUAAAUGA U
CACCAGACGCUUCUUCUUG^ CUCG U C ACGUCU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut -1 on the 5p arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Mal-Mir-734_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAACUAUUCUGCAACAUUUGUU -22
Get sequence
|
|---|
| Mature sequence |
Mal-Mir-734_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UAAAUGCUGCAGAAUUGUGCUC -60
Get sequence
|
|---|
