MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-1388

Family name MIR-1388 (all species)
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-352
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(monDom5_add)		 1: 472807067-472807126 [+] UCSC Ensembl
Seed GGACUGU
Precursor
(pre-Mir +30nt flank)		 
AGUGGUUUGGAAGCAAUGGAAGGUGCAUCUAGGACUGUCUAACCUGAGAAUGGUGAAUCUCAGGGUCAAUCUCAGGUUUGUCAGCCCAUGAGGUGCCUUCCCCAGACCUCCAAUCCCAGA
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Structure
        10          20        30        40        50         
AGUGGUUUGGAAGCAAU--|     UG A  UA  A   UCU         A  GUGAAU 
                   GGAAGG  C UC  GG CUG   AACCUGAGA UG      C
                   CCUUCC  G AG  CC GAC   UUGGACUCU AC      U
AGACCCUAACCUCCAGACC^     GU G  UA  C   UGU         A  UGGGAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-1388_5p
mirBase accessionMIMAT0050134
Sequence 
0- AGGACUGUCUAACCUGAGAAUG -22
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Star sequence

Mdo-Mir-1388_3p*
mirBase accessionMIMAT0050135
Sequence 
38- AUCUCAGGUUUGUCAGCCCAUG -60
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