MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-317-P1

Family name MIR-317 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-317-P2 
Orthologues Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Cte-Mir-317  Dan-Mir-317  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) C. gigas
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)		 scaffold622: 468076-468134 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-317-P1)		 Mir-317-P1 scaffold622: 468076-468134 [+] Ensembl
Mir-317-P2 scaffold622: 468583-468640 [+] Ensembl
Mir-277 scaffold622: 474084-474143 [+] Ensembl
Mir-34 scaffold622: 474792-474856 [+] Ensembl
Seed GAACACA
Precursor
(pre-Mir +30nt flank)		 
AGUUAAGCCAGAGAACAGCUUGUGGAGGGUAAGGUACCAUUGUGUGUUUGUAUAGGAAUACACUAUGAACACAGCUGGUGGUAUCUUGUUCUCUGUGAUGCUUUAGCUACUGCUGCUGC
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Structure
        10          20        30        40          50        
AGUUAAGCCAGAGAACA-  - UG     GG            - -|     UG  UAGGA 
                  GC U  UGGAG  UAAGGUACCAUU G UGUGUU  UA     \
                  CG A  GUCUC  GUUCUAUGGUGG C ACACAA  AU     A
CGUCGUCGUCAUCGAUUU  U GU     UU            U G^     GU  CACAU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-317-P1_5p*
mirBase accessionNone
Sequence 
0- AAGGUACCAUUGUGUGUUUGUA -22
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Mature sequence

Mgi-Mir-317-P1_3p
mirBase accessionNone
Sequence 
35- UGAACACAGCUGGUGGUAUCUUGU -59
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