| MirGeneDB ID | Npo-Mir-12500 |
|---|---|
| Family name | MIR-12500 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Esc-Mir-12500-v1 Obi-Mir-12500-v1 Ovu-Mir-12500-v1 |
| Node of Origin (locus) | Cephalopoda |
| Node of Origin (family) | Cephalopoda |
| Genome context (GCA_018389105_NPO) |
JACATO010000115.1: 633204-633265 [-] Ensembl |
| Seed | UGUCGGC |
| Precursor (pre-Mir +30nt flank) |
GGUCGUCAAGAACACCCGGGUAGUUCCAGCCAAACACCCCGCCGGCUGAAAAGGUCCUGGUUCUUACCUUGUCGGCUGACCGGUUGUUUGGUGGGUCCGCCUGUCAGUCUGCCUGCCAACAUGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGUCGUCAAGAACACCC---| AGU G CC C- A UCCUG GGGU UCCA CCAAACA CCG CGGCUGA AAGG G UCCG GGGU GGUUUGU GGC GUCGGCU UUCC U UACAACCGUCCGUCUGACUG^ CCU - U- CA G AUUCU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Npo-Mir-12500_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CAAACACCCCGCCGGCUGAAAAGG -24
Get sequence
|
| Mature sequence | Npo-Mir-12500_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UUGUCGGCUGACCGGUUGUUUGGU -62
Get sequence
|
