Mir-430-P54

MirGeneDB ID

Oan-Mir-430-P54

Family name

MIR-430 (all species)

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-1420b

Paralogues

Oan-Mir-430-P1 Oan-Mir-430-P2 Oan-Mir-430-P3 Oan-Mir-430-P4 Oan-Mir-430-P53 Oan-Mir-430-P55 Oan-Mir-430-P56 Oan-Mir-430-P57 Oan-Mir-430-P58 Oan-Mir-430-P59 Oan-Mir-430-P60 Oan-Mir-430-P61

Orthologues

Node of Origin (locus)

O. anatinus

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041737.1: 54187300-54187360 [+]

Clustered miRNAs
(< 50kb from Mir-430-P54)

Mir-430-P53 NC_041737.1: 54187151-54187209 [+]
Mir-430-P54 NC_041737.1: 54187300-54187360 [+]
Mir-430-P55 NC_041737.1: 54187861-54187919 [+]
Mir-430-P56 NC_041737.1: 54190035-54190095 [+]
Mir-430-P57 NC_041737.1: 54190187-54190244 [+]
Mir-430-P58 NC_041737.1: 54190481-54190536 [+]
Mir-430-P60 NC_041737.1: 54191452-54191511 [+]
Mir-430-P59 NC_041737.1: 54191591-54191649 [+]
Mir-430-P61 NC_041737.1: 54191823-54191881 [+]

Seed

AAGUGCC

Precursor
(pre-Mir +30nt flank)

AGCGUAUUCACUUUUUGCUCAACUCUGCCUAUCCAAUCUGGGAGCACUCUCCAGUGACUUGAAGAAAGGAAAGUGCCACCUGACUGGAUGAGUUUGGUUGGGAUGAUAUGCCGGAGGUGGG

Get precursor sequence

Structure

        10          20        30        40        50          
AGCGUAUUCACUUUUUG--|      CU  C      A  U  GA     C   AGUGACU 
                   CUCAACU  GC UAUCCA UC GG  GCACU UCC       \
                   GGGUUGG  UG GUAGGU AG CC  CGUGA AGG       U
GGGUGGAGGCCGUAUAGUA^      UU  A      C  U  AC     A   AAAGAAG 
 .       110       100        90        80        70