| MirGeneDB ID | Obi-Mir-12580 |
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| Family name |
MIR-12580 (all species) |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Ovu-Mir-12580
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| Node of Origin (locus) |
Octopus
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| Node of Origin (family) |
Octopus
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Genome context
(PRJNA270931_OBI) |
KQ427473: 22375-22430 [-]
Ensembl
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| Seed |
ACCGCUU |
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Precursor
(pre-Mir +30nt flank) |
GUUUUCCUUUGCUAUAUGGACUUCUUUCCCAACCGCUUGUUGUUGCCUUCUUGUAAUAUUCUACGAAGGUGGCAUCAAAGGGUCAGGAAAGGGAACCUUAUUCUGCAACAAACACA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUUUUCCUUUGCUAUAU--| AC CA G GU- UG UUGUAA
GG UUCUUUCC ACC CUU UGU CCUUC U
CC GGGAAAGG UGG GAA ACG GGAAG A
ACACAAACAACGUCUUAUU^ AA AC - ACU GU CAUCUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Obi-Mir-12580_5p |
| mirBase accession | None |
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| Sequence |
0- AACCGCUUGUUGUUGCCUUCUU -22
Get sequence
|
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| Star sequence |
Obi-Mir-12580_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
34- GAAGGUGGCAUCAAAGGGUCAG -56
Get sequence
|
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