| MirGeneDB ID | Ovu-Mir-12580 |
|---|
| Family name |
MIR-12580 (all species) |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Mir-12580
|
|---|
| Node of Origin (locus) |
Octopus
|
|---|
| Node of Origin (family) |
Octopus
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01025585.1: 22530-22585 [-]
Ensembl
|
|---|
| Seed |
ACCGCUU |
|---|
Precursor
(pre-Mir +30nt flank) |
GUUUUCUUUUGUUCAGUGGACUUCUUUCCCAACCGCUUGUUGUUGCCUUCUUGUAUUAUUCUACGAAGGUGGCAUCAAAGGGUCAGGAAAGGGAACCUUAUUCUGCAACAAACACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUUUUCUUUUGUUCAGU--| AC CA G GU- UG UUGUAU
GG UUCUUUCC ACC CUU UGU CCUUC U
CC GGGAAAGG UGG GAA ACG GGAAG A
ACACAAACAACGUCUUAUU^ AA AC - ACU GU CAUCUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Ovu-Mir-12580_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AACCGCUUGUUGUUGCCUUCUU -22
Get sequence
|
|---|
| Star sequence |
Ovu-Mir-12580_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- GAAGGUGGCAUCAAAGGGUCAG -56
Get sequence
|
|---|
