| MirGeneDB ID | Ocu-Mir-1842 |
|---|
| Family name |
MIR-1842 (all species) |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bta-Mir-1842-v1
Cfa-Mir-1842-v1
Cpo-Mir-1842-v1
Dno-Mir-1842-v1
Eca-Mir-1842-v1
Mmr-Mir-1842-v1
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(oryCun2_add) |
chrUn1799: 11052-11112 [-]
UCSC
Ensembl
|
|---|
| Seed |
UGGCUCU |
|---|
Precursor
(pre-Mir +30nt flank) |
UGCGUGCCUGCGAGGUCAGUGGUGCCGACGCUGGCUCUGCGAGGUCAGCUCAGGGUGGGACUGGACAUUGAGCAGGCCUGUCGGGGCGCCUCACCCACACCUUCCUCUUCUGCCGGGGGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGCGUGCCUGCGAGGUCA-----| UGCC C UG CG A GGGUGGG
GUGG GA GC GCUCUG AGGUC GCUCA A
CACC CU CG CGGGGC UCCGG CGAGU C
GUGGGGGCCGUCUUCUCCUUCCA^ CA-- C -- UG A UACAGGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Ocu-Mir-1842_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CUGGCUCUGCGAGGUCAGCUCA -22
Get sequence
|
|---|
| Star sequence |
Ocu-Mir-1842_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
40- AGCAGGCCUGUCGGGGCGCCU -61
Get sequence
|
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