MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-2691-P5

Family name MIR-2691 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-2691-P1  Pdu-Mir-2691-P2a  Pdu-Mir-2691-P2b  Pdu-Mir-2691-P3  Pdu-Mir-2691-P4  Pdu-Mir-2691-P5-v1 
Orthologues Cte-Mir-2691  Snu-Mir-2691 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000027.1: 5652968-5653026 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2691-P5-v2)		 Mir-2691-P5-v1 JAPTHN010000027.1: 5652968-5653026 [-] Ensembl
Mir-2691-P5-v2 JAPTHN010000027.1: 5652968-5653026 [-] Ensembl
Variant

Pdu-Mir-2691-P5-v2
Seed UUUGCAU
Precursor
(pre-Mir +30nt flank)		 
AGGAUGAAAGGAGAUUAGCUUGCCUUCCUCGGUAGCGAUUCCCUGACAAAAUCUUCAUAUAGUUAGAUUUUGCAUCGUAUCACUGCCGGAGAUGGUAUGAUUGUCGCUGAGGACGAAAA
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Structure
        10        20          30        40        50         
AGGAUGAAAGGAGAUUAGCU--|   U  CU      C   UCCC  A       UUCAU 
                      UGCC UC  CGGUAG GAU    UG CAAAAUC     A
                      AUGG AG  GCCGUC CUA    AC GUUUUAG     U
AAAAGCAGGAGUCGCUGUUAGU^   U  AG      A   UGCU  -       AUUGA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-2691-P5-v2_5p*
mirBase accessionNone
Sequence 
0- GGUAGCGAUUCCCUGACAAAAUC -23
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Mature sequence

Pdu-Mir-2691-P5-v2_3p
mirBase accessionNone
Sequence 
37- UUUUGCAUCGUAUCACUGCCGG -59
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Variant

Pdu-Mir-2691-P5-v1
Seed UUUUGCA
Precursor
(pre-Mir +30nt flank)		 
AGGAUGAAAGGAGAUUAGCUUGCCUUCCUCGGUAGCGAUUCCCUGACAAAAUCUUCAUAUAGUUAGAUUUUGCAUCGUAUCACUGCCGGAGAUGGUAUGAUUGUCGCUGAGGACGAAAA
Get precursor sequence
Structure
        10        20          30        40        50         
AGGAUGAAAGGAGAUUAGCU--|   U  CU      C   UCCC  A        UCAU 
                      UGCC UC  CGGUAG GAU    UG CAAAAUCU    A
                      AUGG AG  GCCGUC CUA    AC GUUUUAGA    U
AAAAGCAGGAGUCGCUGUUAGU^   U  AG      A   UGCU  -        UUGA 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-2691-P5-v1_5p*
mirBase accessionNone
Sequence 
0- GGUAGCGAUUCCCUGACAAAAUCU -24
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Mature sequence

Pdu-Mir-2691-P5-v1_3p
mirBase accessionNone
Sequence 
36- AUUUUGCAUCGUAUCACUGCCGG -59
Get sequence