MirGeneDB 3.0
MirGeneDB ID

Pdu-Novel-4

Family name PDU-NOVEL-4 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) P. dumerilii
Node of Origin (family) P. dumerilii
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000027.1: 675354-675412 [-] Ensembl
Clustered miRNAs
(< 50kb from Novel-4-v1)		 Novel-4-v1 JAPTHN010000027.1: 675354-675412 [-] Ensembl
Novel-4-v2 JAPTHN010000027.1: 675354-675412 [-] Ensembl
Variant

Pdu-Novel-4-v1
Seed ACGAAUC
Precursor
(pre-Mir +30nt flank)		 
GCCUCUAUUGAGGCACGGACAGAUUCUGUCCCGGGUUCUCGGGUUCGUAUUCUAGGUUAUGAGAAAAUACGAAUCGGAAAAUUCGGGACGGAAUUGUGUCCUCACACAUCUUCAAGGGA
Get precursor sequence
Structure
        10          20         30        40        50        
GCCUCUAUUGAGGCACG--    -|               C  G          CUAGGU 
                   GACA GAUUCUGUCCCGGGUU UC GGUUCGUAUU      U
                   CUGU UUAAGGCAGGGCUUAA AG CUAAGCAUAA      A
AGGGAACUUCUACACACUC    G^               A  G          AAGAGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Novel-4-v1_5p*
mirBase accessionNone
Sequence 
0- CCGGGUUCUCGGGUUCGUAUU -21
Get sequence
Mature sequence

Pdu-Novel-4-v1_3p
mirBase accessionNone
Sequence 
37- UACGAAUCGGAAAAUUCGGGAC -59
Get sequence
Variant

Pdu-Novel-4-v2
Seed UACGAAU
Precursor
(pre-Mir +30nt flank)		 
GCCUCUAUUGAGGCACGGACAGAUUCUGUCCCGGGUUCUCGGGUUCGUAUUCUAGGUUAUGAGAAAAUACGAAUCGGAAAAUUCGGGACGGAAUUGUGUCCUCACACAUCUUCAAGGGA
Get precursor sequence
Structure
        10          20         30        40        50        
GCCUCUAUUGAGGCACG--    -|               C  G          CUAGGU 
                   GACA GAUUCUGUCCCGGGUU UC GGUUCGUAUU      U
                   CUGU UUAAGGCAGGGCUUAA AG CUAAGCAUAA      A
AGGGAACUUCUACACACUC    G^               A  G          AAGAGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Novel-4-v2_5p*
mirBase accessionNone
Sequence 
0- CCGGGUUCUCGGGUUCGUAUUC -22
Get sequence
Mature sequence

Pdu-Novel-4-v2_3p
mirBase accessionNone
Sequence 
36- AUACGAAUCGGAAAAUUCGGGAC -59
Get sequence