| MirGeneDB ID | Pfl-Mir-4839 |
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| Family name |
MIR-4839 (all species) |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Sko-Mir-4839
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| Node of Origin (locus) |
Enteropneusta
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| Node of Origin (family) |
Enteropneusta
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Genome context
(Pfl) |
LD346064.1: 153036-153094 [-]
|
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| Seed |
AAGUUUU |
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Precursor
(pre-Mir +30nt flank) |
GAUUUAAAGGUCUUACUUAGCAUGGGUUGCUAAGUUUUUCCACUAUAACUGUGUGACCUUUGAAUUCACAGUUUGUGGAAAUACUUAACCAUCCUAUGUUAUCUUUGCAACUAAGGAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAUUUAAAGGUCUUACU- U C-| U UAU UGACCU
UAGCAUGGG UG UAAGU UUUCCAC AACUGUG \
AUUGUAUCC AC AUUCA AAAGGUG UUGACAC U
AAAGGAAUCAACGUUUCU U CA^ U U-- UUAAGU
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Although there is no star recorded for Mir-4839 expression of the 5p arm is deeply conserved across enteropneusts. |
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Pfl-Mir-4839_5p |
| mirBase accession | None |
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| Sequence |
0- UAAGUUUUUCCACUAUAACUGUG -23
Get sequence
|
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| Star sequence |
Pfl-Mir-4839_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
38- CAGUUUGUGGAAAUACUUAAC -59
Get sequence
|
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