| MirGeneDB ID | Pma-Mir-140-o3 |
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| Family name |
MIR-140 (all species) |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
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| Paralogues |
Pma-Mir-140-o1
Pma-Mir-140-o2
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| Orthologues |
Ebu-Mir-140-P3-v1
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
PIZI01000964.1: 4177-4240 [+]
UCSC
Ensembl
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| Seed |
CCACAGG |
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Precursor
(pre-Mir +30nt flank) |
AGGCUGCGUGGGUCAGUUUAUUGCUUGGUGCUGUGAGCUGCUGCGUGGUGAGUUUCUCGCUAGCCAAGCGCUACCACAGGGUAGAACCACGGACGGGUCGCGUGGAGGAGCCACGCGGAGCCGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGGCUGCGUGGGUCAGUUUAU- --| G G AG- GC G UUUCUCGC
UGC UU GU CUGUG CUGCU GUGGU AG U
GCG GG CA GGCAC GAUGG CACCA UC A
GGCCGAGGCGCACCGAGGAGGU CU^ G - CAA GA - GCGAACCG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Not in assembly but in trace archives. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Star sequence |
Pma-Mir-140-o3_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CUGUGAGCUGCUGCGUGGUGAG -22
Get sequence
|
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| Mature sequence |
Pma-Mir-140-o3_3p |
| mirBase accession | None |
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| Sequence |
42- ACCACAGGGUAGAACCACGGAC -64
Get sequence
|
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