| MirGeneDB ID | Pma-Mir-15-P1o3 |
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| Family name |
MIR-15 (all species) |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-497
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| Paralogues |
Pma-Mir-15-P1o1
Pma-Mir-15-P1o2
Pma-Mir-15-P2o1
Pma-Mir-15-P2o4
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| Orthologues |
Cin-Mir-15-P1
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Olfactores
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046115.1: 2947659-2947716 [+]
UCSC
Ensembl
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| Seed |
AGCAGCA |
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Precursor
(pre-Mir +30nt flank) |
GCAGCGGGCAGGCGAAACCGGCCACUGGUGCAGCAGCACAACACGAUCUGUUUAGCUUUGGCUCGGCCAGAGCGUGGUGUGCUGCAGCACAAGGGUAGGGUGCUCACGACUGCCGCUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCAGCGGGCAGGCGAAA--| G A G A A A UUUAGCUU
CC GCC CU GUGC GCAGCACA CACG UCUG \
GG UGG GA CACG CGUCGUGU GUGC AGAC U
GUCGCCGUCAGCACUCGUG^ A - A A G G CGGCUCGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
Unknown
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| Motifs | No |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-15-P1o3_5p |
| mirBase accession | MIMAT0019556 |
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| Sequence |
0- CAGCAGCACAACACGAUCUGUU -22
Get sequence
|
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| Star sequence |
Pma-Mir-15-P1o3_3p* |
| mirBase accession | MIMAT0019557 |
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| Sequence |
36- CCAGAGCGUGGUGUGCUGCAGC -58
Get sequence
|
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