MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-15-P1o1

Family name MIR-15 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-15a
Paralogues Pma-Mir-15-P1o2  Pma-Mir-15-P1o3  Pma-Mir-15-P2o1  Pma-Mir-15-P2o4 
Orthologues Cin-Mir-15-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Olfactores
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046123.1: 1714265-1714327 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1o1)		 Mir-15-P2o1 NC_046123.1: 1713872-1713934 [-] UCSC Ensembl
Mir-15-P1o1 NC_046123.1: 1714265-1714327 [-] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
AAGAUGGAAAUGACUGGCCUCGUGGAGCUGUAGCAGCACGUAAUGGUUUGUAUUUGGGAUGUCAGGAGUUACAGACCAUGCUGUGCUGCCGCAGUGGCACGAGGAGAAGCGCACUCUCACUGC
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Structure
        10          20        30        40        50        60 
AAGAUGGAAAUGACUGG--|      GA    UA        UA          UUUGGGAU 
                   CCUCGUG  GCUG  GCAGCACG  AUGGUUUGUA        \
                   GGAGCAC  UGAC  CGUCGUGU  UACCAGACAU        G
CGUCACUCUCACGCGAAGA^      GG    GC        CG          UGAGGACU 
 120       110       100        90        80        70
Deep sequencing
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CommentThere is a 1 nt snp between this precursor sequence (which is in the trace archive and supported by the read data) and the assembled sequence.
3' NTU No
MotifsNo
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-15-P1o1_5p
mirBase accessionMIMAT0019379
Sequence 
0- UAGCAGCACGUAAUGGUUUGUA -22
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Star sequence

Pma-Mir-15-P1o1_3p*
mirBase accessionNone
Sequence 
41- CAGACCAUGCUGUGCUGCCGCA -63
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