MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-181-P2o2

Family name MIR-181 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-181-P1o1  Pma-Mir-181-P1o2  Pma-Mir-181-P2o1 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046118.1: 4216042-4216102 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2o2)		 Mir-181-P1o2 NC_046118.1: 4215267-4215339 [+] UCSC Ensembl
Mir-181-P2o2 NC_046118.1: 4216042-4216102 [+] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
AGGAGGAGGAGGCGACCCAGGGCUGUGCUCGACAUUCACCGCUGUCGGUGGGUUGUGACUAAUGCUCAACUCGCCGGCCCGUGAAUGCUACUGCAGCCAGAGUAACUCGGCUUCCGCGGAU
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Structure
        10        20           30        40        50        60 
AGGAGGAGGAGGCGACCCAG---|     GCUCGA       CGCU           GUGACU 
                       GGCUGU      CAUUCAC    GUCGGUGGGUU      \
                       CCGACG      GUAAGUG    CGGCCGCUCAA      A
UAGGCGCCUUCGGCUCAAUGAGA^     UCAUC-       CC--           CUCGUA 
 .       110       100        90         80          70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-181-P2o2_5p
mirBase accessionNone
Sequence 
0- GACAUUCACCGCUGUCGGUGGGUU -24
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Star sequence

Pma-Mir-181-P2o2_3p*
mirBase accessionNone
Sequence 
38- ACUCGCCGGCCCGUGAAUGCUAC -61
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