MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-338-P3

Family name MIR-338 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-338b
Paralogues Pma-Mir-338-o3 
Orthologues Ebu-Mir-338-P3 
Node of Origin (locus) Cyclostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046071.1: 19740631-19740695 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-338-P3)		 Mir-338-o3 NC_046071.1: 19738758-19738816 [+] UCSC Ensembl
Mir-338-P3 NC_046071.1: 19740631-19740695 [+] UCSC Ensembl
Seed CCAGUGU
Precursor
(pre-Mir +30nt flank)		 
GGACGCCGUCGGAUUGGCAGUGGCAGUGGGAACAAAUCACAGUGACUGCAGAGUCGGAGAUGUGGACAGAACUCCAGUGUCUGUGAUUUCGUUCUCCACUCUGCUCGCCCAAACAUCCUCCCACC
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Structure
        10          20         30         40        50        60  
GGACGCCGUCGGAUUGGC--  UG C     -    -|        UG    CA    CGGAGAU 
                    AG  G AGUGG GAAC AAAUCACAG  ACUG  GAGU       G
                    UC  C UCACC CUUG UUUAGUGUC  UGAC  CUCA       U
CCACCCUCCUACAAACCCGC  GU -     U    C^        UG    --    AGACAGG 
   120       110        100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-338-P3_5p* (predicted)
mirBase accessionNone
Sequence 
0- AACAAAUCACAGUGACUGCAGAGU -24
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Mature sequence

Pma-Mir-338-P3_3p
mirBase accessionMIMAT0019540
Sequence 
42- UCCAGUGUCUGUGAUUUCGUUCU -65
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