| MirGeneDB ID | Pmi-Mir-2008 |
|---|
| Family name |
MIR-2008 (all species) |
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| Species |
Bat starfish (Patiria miniata) |
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| MiRBase ID |
pmi-mir-2008
|
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| Paralogues |
|
|---|
| Orthologues |
Pfl-Mir-2008
Sko-Mir-2008-v1
Spu-Mir-2008
|
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| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
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Genome context
(Pmin1) |
JH769329.1: 20489-20551 [+]
|
|---|
| Seed |
GUAUUAA |
|---|
Precursor
(pre-Mir +30nt flank) |
ACAGUUACAGUUUUUAUCCAUCUUUUACCCCGUAUUAACACUGCGGCUGAUGAGGGCUGUUAAACCAACCAUCAGCCUCGCUGUCAAUACGAGGUAAGGGCUGACAGACUUCCAAAGCCAAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACAGUUACAGUUUUUAUC--| U C A C C AGGGCUGU
CA CUUUUACC CGUAUU ACA UG GGCUGAUG \
GU GGGAAUGG GCAUAA UGU GC CCGACUAC U
CUAACCGAAACCUUCAGACA^ C A C C U CAACCAAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Pmi-Mir-2008_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CGUAUUAACACUGCGGCUGAUGA -23
Get sequence
|
|---|
| Star sequence |
Pmi-Mir-2008_3p* |
| mirBase accession | MIMAT0032182 |
|---|
| Sequence |
40- AUCAGCCUCGCUGUCAAUACGAG -63
Get sequence
|
|---|
