MirGeneDB 3.0
MirGeneDB ID

Spu-Mir-2008

Family name MIR-2008 (all species)
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID spu-mir-2008
Paralogues
Orthologues Pfl-Mir-2008  Pmi-Mir-2008  Sko-Mir-2008-v1 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Spur_5.0)		 AAGJ06000010.1: 6802287-6802345 [-] Ensembl
Seed UAUUAAC
Precursor
(pre-Mir +30nt flank)		 
CGAGGUAGCAUAUUCUCCACUUUUUACCCCGUAUUAACAAUGUGGCUGAUGAGGAAUCUUAUGAACCAUCAGCCUCGCUGUCAAUACGAGGUAAGGAGUGACAACCAACCAAUCAACGA
Get precursor sequence
Structure
        10          20        30        40        50         
CGAGGUAGCAUAUUCUC--|          C      A   A  U        AGGAAUC 
                   CACUUUUUACC CGUAUU ACA UG GGCUGAUG       \
                   GUGAGGAAUGG GCAUAA UGU GC CCGACUAC       U
AGCAACUAACCAACCAACA^          A      C   C  U        CAAGUAU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
32 Bl Eg Ga Ov Pl To To
Mature sequence

Spu-Mir-2008_5p
mirBase accessionNone
Sequence 
0- GUAUUAACAAUGUGGCUGAUGA -22
Get sequence
Star sequence

Spu-Mir-2008_3p*
mirBase accessionMIMAT0009749
Sequence 
37- AUCAGCCUCGCUGUCAAUACGA -59
Get sequence