MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-122

Family name MIR-122 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-122
Paralogues
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cja-Mir-122  Cli-Mir-122  Cmi-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Ebu-Mir-122-P3  Ebu-Mir-122-P4  Eca-Mir-122  Ete-Mir-122  Gga-Mir-122-P1  Gga-Mir-122-P2  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Laf-Mir-122  Lch-Mir-122  Loc-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mmr-Mir-122  Mmr-Mir-122-as  Mmu-Mir-122  Mun-Mir-122  Neu-Mir-122  Oan-Mir-122  Ocu-Mir-122  Pab-Mir-122  Pbv-Mir-122  Pma-Mir-122  Sha-Mir-122  Spt-Mir-122  Sto-Mir-122  Tgu-Mir-122  Tni-Mir-122  Xla-Mir-122-P5  Xla-Mir-122-P6  Xtr-Mir-122 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr18: 60755299-60755356 [+] UCSC Ensembl
Seed GGAGUGU
Precursor
(pre-Mir +30nt flank)		 
UGUGCCUACAGACUCUCCUUAGCAGAGCUCUGGAGUGUGACAAUGGUGUUUGUGUCCAAAACAUCAAACGCCAUCAUCACACUAAACAGCUACUGCUAGGCUAUCCGUCUACUCCGUG
Get precursor sequence
Structure
        10         20         30        40        50        
UGUGCCUACAGACUCUC-        -|   CUGG       CA          UGUCC 
                  CUUAGCAG AGCU    AGUGUGA  AUGGUGUUUG     A
                  GGAUCGUC UCGA    UCACACU  UACCGCAAAC     A
GUGCCUCAUCUGCCUAUC        A^   CAAA       AC          UACAA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe Dicer cut is shifted +1 in murid rodents relative to other vertebrates. The ancestral cut though is also seen and this cut is mono-adenylated at the 3p end.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-122_5p
mirBase accessionMIMAT0000827
Sequence 
0- UGGAGUGUGACAAUGGUGUUUGU -23
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Proposed targets microrna.org: MIMAT0000827
TargetScanVert: rno-miR-122-5p
miRDB: MIMAT0000827
Star sequence

Rno-Mir-122_3p*
mirBase accessionMIMAT0017116
Sequence 
35- AAACGCCAUCAUCACACUAAACA -58
Get sequence
Proposed targets TargetScanVert: rno-miR-122-3p
miRDB: MIMAT0017116