| MirGeneDB ID | Rno-Mir-1955 |
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| Family name |
MIR-1955 (all species) |
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| Species |
Norway rat (Rattus norvegicus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Mmu-Mir-1955
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| Node of Origin (locus) |
Muridae
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| Node of Origin (family) |
Muridae
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Genome context
(rn6) |
chr3: 81106509-81106571 [+]
UCSC
Ensembl
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| Seed |
GUCCCAG |
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Precursor
(pre-Mir +30nt flank) |
UUGCUGUGAAAAGCUGGUUUACUUACUACAAGUCCCAGGGUGCACUGCACCUUUUUCUUAACUUCAGAUAAGAGCAUUGCAUGCUGGGAUAUGUAGUUGGUUUAAAUAGUACGGAGAACUCUU
Get precursor sequence
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| Structure | 10 20 30 40 50 60
UUGCUGUGAAAAGCUGGUUU--| U A G C AC UUUCUUA
ACU ACUACA GUCCCAG GUGCA UGC CUU A
UGG UGAUGU UAGGGUC UACGU ACG GAA C
UUCUCAAGAGGCAUGAUAAAUU^ U A G U A- UAGACUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | No |
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Tissue expression
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| Dr |
Dr |
Ad |
Bi |
Bi |
Bi |
Bi |
Br |
Br |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Co |
Co |
Co |
Co |
Du |
Du |
Du |
Du |
Fa |
He |
He |
He |
Hi |
Hi |
Il |
Il |
Je |
Je |
Ki |
Ki |
Ki |
Ki |
Ki |
La |
Li |
Li |
Li |
Li |
Li |
Li |
Lu |
Me |
Me |
Mu |
Ov |
Pa |
Pa |
Pa |
Sk |
Sm |
So |
So |
So |
So |
Sp |
St |
St |
St |
St |
Te |
Te |
Th |
Ut |
Wh |
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| Mature sequence |
Rno-Mir-1955_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGUCCCAGGGUGCACUGCACCUU -23
Get sequence
|
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| Star sequence |
Rno-Mir-1955_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
41- GAGCAUUGCAUGCUGGGAUAUG -63
Get sequence
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