MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-320

Family name MIR-320 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-320
Paralogues
Orthologues Bta-Mir-320-P1c  Bta-Mir-320-P1d  Cfa-Mir-320  Cja-Mir-320-P1  Cpo-Mir-320  Dno-Mir-320  Eca-Mir-320  Ete-Mir-320  Hsa-Mir-320-P1  Hsa-Mir-320-P2a  Hsa-Mir-320-P2b  Hsa-Mir-320-P3  Hsa-Mir-320-P4  Laf-Mir-320  Mml-Mir-320-P1  Mml-Mir-320-P2a  Mml-Mir-320-P2b  Mml-Mir-320-P3  Mml-Mir-320-P4  Mmr-Mir-320-P1a  Mmr-Mir-320-P1b  Mmr-Mir-320-P1c  Mmr-Mir-320-P1d  Mmr-Mir-320-P5  Mmr-Mir-320-P6  Mmr-Mir-320-P7  Mmr-Mir-320-P8  Mmu-Mir-320  Ocu-Mir-320  Pab-Mir-320-P1  Pab-Mir-320-P2a  Pab-Mir-320-P2b  Pab-Mir-320-P3  Pab-Mir-320-P4 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr15: 52134291-52134344 [+] UCSC Ensembl
Seed AAAGCUG
Precursor
(pre-Mir +30nt flank)		 
UAUUUAUCAGACGGUGCCUCGCUGUCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGGAUAUGGGAGUGGAUUCUGAACUGU
Get precursor sequence
Structure
        10        20           30        40        50      
UAUUUAUCAGACGGUGCC   C      C---|        UU       C    CGG 
                  UCG UGUCCU    CGCCUUCUC  CCCGGUU UUCC   A
                  GGU AUAGGA    GCGGGAGAG  GGGUCGA AAGG   G
UGUCAAGUCUUAGGUGAG   -      AAAA^        UU       A    GCU 
  110       100         90        80        70        60
Deep sequencing
Go to detailed chart
CommentAs a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced.
3' NTU No
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-320_5p* (predicted)
mirBase accessionMIMAT0017168
Sequence 
0- GCCUUCUCUUCCCGGUUCUUCC -22
Get sequence
Proposed targets TargetScanVert: rno-miR-320-5p
miRDB: MIMAT0017168
Mature sequence

Rno-Mir-320_3p
mirBase accessionMIMAT0000903
Sequence 
32- AAAAGCUGGGUUGAGAGGGCGA -54
Get sequence
Proposed targets microrna.org: MIMAT0000903
TargetScanVert: rno-miR-320-3p
miRDB: MIMAT0000903