MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-7398-P9d

Family name MIR-7398 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-7398-o5  Sha-Mir-7398-o6  Sha-Mir-7398-o7  Sha-Mir-7398-o8  Sha-Mir-7398-o9  Sha-Mir-7398-o13  Sha-Mir-7398-o14  Sha-Mir-7398-P5e  Sha-Mir-7398-P5f  Sha-Mir-7398-P9e-v1  Sha-Mir-7398-P21  Sha-Mir-7398-P24c-v1  Sha-Mir-7398-P24d-v1 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)		 GL867608.1: 2081489-2081549 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7398-P9d-v1)		 Mir-7398-P5e GL867608.1: 2079471-2079531 [+] UCSC Ensembl
Mir-7398-P5f GL867608.1: 2080041-2080101 [+] UCSC Ensembl
Mir-7398-P9d-v1 GL867608.1: 2081489-2081549 [+] UCSC Ensembl
Mir-7398-P9d-v2 GL867608.1: 2081490-2081548 [+] UCSC Ensembl
Mir-7398-P9e-v1 GL867608.1: 2082124-2082184 [+] UCSC Ensembl
Mir-7398-P9e-v2 GL867608.1: 2082125-2082183 [+] UCSC Ensembl
Mir-7398-o5 GL867608.1: 2084664-2084724 [+] UCSC Ensembl
Mir-7398-o6 GL867608.1: 2087632-2087690 [+] UCSC Ensembl
Mir-7398-o7 GL867608.1: 2088260-2088322 [+] UCSC Ensembl
Mir-7398-o8 GL867608.1: 2090858-2090916 [+] UCSC Ensembl
Mir-7398-o9 GL867608.1: 2092125-2092182 [+] UCSC Ensembl
Mir-7398-P21 GL867608.1: 2093388-2093443 [+] UCSC Ensembl
Mir-7398-P24c-v2 GL867608.1: 2099749-2099808 [+] UCSC Ensembl
Mir-7398-P24c-v1 GL867608.1: 2099749-2099808 [+] UCSC Ensembl
Mir-7398-P24d-v1 GL867608.1: 2102079-2102138 [+] UCSC Ensembl
Mir-7398-P24d-v2 GL867608.1: 2102079-2102138 [+] UCSC Ensembl
Mir-7398-o13 GL867608.1: 2103168-2103224 [+] UCSC Ensembl
Mir-7398-o14 GL867608.1: 2104962-2105021 [+] UCSC Ensembl
Variant

Sha-Mir-7398-P9d-v1
Seed UGUGUAG
Precursor
(pre-Mir +30nt flank)		 
UCUCCUGUUAGCCGAUCUCCAGGUGCCCAAUUGUGUAGAGGUAAGAAAUAUGCUGUGUUCACGAUUGGUAUAUUUCUUGCCUCUACCAAUUGAGCAUCUUGGACUCUGCCACUGUCCCCUG
Get precursor sequence
Structure
        10         20         30        40        50        60
UCUCCUGUUAGCCGAUC-   -|     C      U                   UGUGUU 
                  UCC AGGUGC CAAUUG GUAGAGGUAAGAAAUAUGC      C
                  AGG UCUACG GUUAAC CAUCUCCGUUCUUUAUAUG      A
GUCCCCUGUCACCGUCUC   U^     A      -                   GUUAGC 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-7398-P9d-v1_5p
mirBase accessionNone
Sequence 
0- UUGUGUAGAGGUAAGAAAUAUGC -23
Get sequence
Star sequence

Sha-Mir-7398-P9d-v1_3p*
mirBase accessionNone
Sequence 
39- AUAUUUCUUGCCUCUACCAAUU -61
Get sequence
Variant

Sha-Mir-7398-P9d-v2
Seed GUGUAGA
Precursor
(pre-Mir +30nt flank)		 
CUCCUGUUAGCCGAUCUCCAGGUGCCCAAUUGUGUAGAGGUAAGAAAUAUGCUGUGUUCACGAUUGGUAUAUUUCUUGCCUCUACCAAUUGAGCAUCUUGGACUCUGCCACUGUCCCCU
Get precursor sequence
Structure
        10          20        30        40        50         
CUCCUGUUAGCCGAUCU-  -|     C      U                    GUGUU 
                  CC AGGUGC CAAUUG GUAGAGGUAAGAAAUAUGCU     C
                  GG UCUACG GUUAAC CAUCUCCGUUCUUUAUAUGG     A
UCCCCUGUCACCGUCUCA  U^     A      -                    UUAGC 
       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-7398-P9d-v2_5p
mirBase accessionNone
Sequence 
0- UGUGUAGAGGUAAGAAAUAUGCU -23
Get sequence
Star sequence

Sha-Mir-7398-P9d-v2_3p*
mirBase accessionNone
Sequence 
37- UAUAUUUCUUGCCUCUACCAAU -59
Get sequence