MirGeneDB 3.0
MirGeneDB ID

Sko-Mir-4835

Family name MIR-4835 (all species)
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4835
Paralogues
Orthologues Pfl-Mir-4835 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)		 NW_003137830.1: 154894-154952 [-]
Seed CAAGCAG
Precursor
(pre-Mir +30nt flank)		 
UCUCCAAUCAACUGCUUGAUGUUCACUUUAAGGUGGCUGGACAGCUUGGUGUGUAAACAGAAUAUCAUCAAGCAGUCCAUCCAUCCUUGCAGUUAACAUUCAUUUCUACAAACUGAUAG
Get precursor sequence
Structure
        10          20        30         40        50        
UCUCCAAUCAACUGCUU--      C   U     -|  C     A        UGUAAA 
                   GAUGUU ACU UAAGG UGG UGGAC GCUUGGUG      C
                   UUACAA UGA GUUCC ACC ACCUG CGAACUAC      A
GAUAGUCAAACAUCUUUAC      U   C     U^  U     A        UAUAAG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Sko-Mir-4835_5p*
mirBase accessionMIMAT0020051
Sequence 
0- AGGUGGCUGGACAGCUUGGUG -21
Get sequence
Mature sequence

Sko-Mir-4835_3p
mirBase accessionMIMAT0020052
Sequence 
37- UCAAGCAGUCCAUCCAUCCUUG -59
Get sequence