Mir-36-o34

MirGeneDB ID

Sma-Mir-36-o34

Family name

MIR-36 (all species)

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

sma-mir-36a

Paralogues

Sma-Mir-36-o33 Sma-Mir-36-o35

Orthologues

Agr-Mir-36 Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 Tur-Mir-36-P34 War-Mir-36

Node of Origin (locus)

S. mansoni

Node of Origin (family)

Protostomia

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601624.3: 72169272-72169343 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-36-o34)

Mir-36-o34 HE601624.3: 72169272-72169343 [-] UCSC Ensembl
Mir-36-o35 HE601624.3: 72204878-72204977 [-] UCSC Ensembl

Seed

CACCGGG

Precursor
(pre-Mir +30nt flank)

UUAAUAUGAAAAAAGUCUGGUAUAUCUUGUGAAGAGUGCCGACCCGGUUAGCCAUUAGAUUAUUGUUAAAGAAACGUGGCCACCGGGUAGACAUUCAUUCGCAGGAUAUUUCACCAUAAUCAACAGUAAAUU

Get precursor sequence

Structure

        10          20        30         40        50        60     
UUAAUAUGAAAAAAGUC--   U            -|    CCG       UA   AUUAGAUUAUU 
                   UGG AUAUCUUGUGAA GAGUG   ACCCGGU  GCC           G
                   ACU UAUAGGACGCUU CUUAC   UGGGCCA  CGG           U
UUAAAUGACAACUAAUACC   U            A^    AGA       C-   UGCAAAGAAAU 
130       120       110       100        90         80        70