| MirGeneDB ID | Spt-Mir-147 |
|---|---|
| Family name | MIR-147 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-147-v1 Ami-Mir-147-v1 Bta-Mir-147 Cfa-Mir-147-P1-v1 Cfa-Mir-147-P2-v1 Cja-Mir-147 Cli-Mir-147 Cmi-Mir-147 Cpi-Mir-147-v1 Cpo-Mir-147-v1 Dno-Mir-147-v1 Eca-Mir-147 Gga-Mir-147 Gja-Mir-147-P3a-v1 Gja-Mir-147-P3b-v1 Hsa-Mir-147-v1 Laf-Mir-147-P4 Laf-Mir-147-P5 Lch-Mir-147 Loc-Mir-147-v1 Mal-Mir-147-v1 Mdo-Mir-147 Mml-Mir-147 Mmr-Mir-147 Mmu-Mir-147 Neu-Mir-147 Oan-Mir-147 Ocu-Mir-147 Pab-Mir-147 Pbv-Mir-147-v1 Pma-Mir-147 Rno-Mir-147-v1 Sha-Mir-147 Tgu-Mir-147 Tni-Mir-147 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01000892.1: 2847035-2847094 [-] UCSC Ensembl |
| Seed | UGUGCGG |
| Precursor (pre-Mir +30nt flank) |
GCUGCCUCAGAAACCCACUCUAUGAAUCUAGUGGAAUCAUUUCCACACAAACUUGACUAAUGAAACCAGUGUGCGGAAAUGCUUCUGCUACGUUUUUAGGGUCUCCCUACAUUUUUGGACGet precursor sequence |
| Structure | 10 20 30 40 50 GCUGCCUCAGAAACCCA--| U C UG U A AACUUGACU CUCUA GAAU UAG GAA CAUUUCC CACA A GGGAU UUUG AUC CUU GUAAAGG GUGU A CAGGUUUUUACAUCCCUCU^ U C GU C C GACCAAAGU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Spt-Mir-147_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GUGGAAUCAUUUCCACACAAAC -22
Get sequence
|
| Mature sequence | Spt-Mir-147_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- GUGUGCGGAAAUGCUUCUGCUA -60
Get sequence
|
