| MirGeneDB ID | Spt-Mir-2970 |
|---|---|
| Family name | MIR-2970 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-2970 Ami-Mir-2970 Cli-Mir-2970 Cpi-Mir-2970 Gga-Mir-2970 Gja-Mir-2970 Lch-Mir-2970 Mdo-Mir-2970 Mun-Mir-2970 Neu-Mir-2970 Oan-Mir-2970 Pbv-Mir-2970 Sha-Mir-2970 Tgu-Mir-2970 Xla-Mir-2970-P1 Xla-Mir-2970-P2 Xtr-Mir-2970 |
| Node of Origin (locus) | Sarcopterygii |
| Node of Origin (family) | Sarcopterygii |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01014177.1: 30619-30677 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-2970) |
Mir-191
QEPC01014177.1: 26608-26670 [+]
UCSC
Ensembl
Mir-425 QEPC01014177.1: 29597-29658 [+] UCSC Ensembl Mir-2970 QEPC01014177.1: 30619-30677 [+] UCSC Ensembl |
| Seed | ACAGUCA |
| Precursor (pre-Mir +30nt flank) |
GCUGGGGUCGCUUCUCCUCCUGCCACUGCAGACAGUCAGCAGUUGGUCUGGCGUGAGCACUGGUUCUCAGAUCACCUCUUGGCUGUGGGUGGUGCCAGGAGCACAGCGAGAGAAGAGGAGet precursor sequence |
| Structure | 10 20 30 40 50 GCUGGGGUCGCUUCUCC--| C UG AG C U CGUGAGC UCCUG CAC C ACAGUCAG AG UGGUCUGG \ AGGAC GUG G UGUCGGUU UC ACUAGACU A AGGAGAAGAGAGCGACACG^ C GU GG C C CUUGGUC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Mature sequence | Spt-Mir-2970_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GACAGUCAGCAGUUGGUCUGGC -22
Get sequence
|
| Star sequence | Spt-Mir-2970_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- CAGAUCACCUCUUGGCUGUGGG -59
Get sequence
|
