MirGeneDB 3.0
MirGeneDB ID

Sro-Mir-9-P35a

Family name MIR-9 (all species)
Species Roscoff worm (Symsagittifera roscoffensis)
MiRBase ID
Paralogues Sro-Mir-9-P35b  Sro-Mir-9-P36 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) S. roscoffensis
Node of Origin (family) Bilateria
Genome context
(GCA_025153585.1_SymRos_1_5_genomic)		 JANVAR010000473.1: 1213595-1213662 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P35a)		 Mir-9-P35a JANVAR010000473.1: 1213595-1213662 [+] UCSC Ensembl
Mir-9-P35b JANVAR010000473.1: 1259271-1259338 [+] UCSC Ensembl
Seed AAAGCUA
Precursor
(pre-Mir +30nt flank)		 
UAAUAAGUUAAAUUUGGAUCUAAGUGAACAACUUUGGUUUUUUUAGUUUUGAGGUGGCUUCAAAAACACUGAAACCUAAAGCUAGAAAACCAAAGAUAAUCACUGUUCCACGAAACUUUUCACACUAU
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Structure
        10        20          30        40        50        60    
UAAUAAGUUAAAUUUGGAUCUA--|    ACAA            U      G   UGGCUUCAA 
                        AGUGA    CUUUGGUUUUUU AGUUUU AGG         A
                        UCACU    GAAACCAAAAGA UCGAAA UCC         A
UAUCACACUUUUCAAAGCACCUUG^    AAUA            -      -   AAAGUCACA 
      120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Po
Star sequence

Sro-Mir-9-P35a_5p*
mirBase accessionNone
Sequence 
0- ACUUUGGUUUUUUUAGUUUUGAGG -24
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Mature sequence

Sro-Mir-9-P35a_3p
mirBase accessionNone
Sequence 
46- UAAAGCUAGAAAACCAAAGAUA -68
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