MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-9-P12

Family name MIR-9 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-9b
Paralogues Tca-Mir-9-P9a  Tca-Mir-9-P9b-v1  Tca-Mir-9-P9c-v1  Tca-Mir-9-P10 
Orthologues Aae-Mir-9-P12-v1  Aga-Mir-9-P12  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P12-v1  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P12-v1  Dgr-Mir-9  Dlo-Mir-9-P12-v1  Dme-Mir-9-P12-v1  Dmo-Mir-9-P12-v1  Dsi-Mir-9-P12-v1  Dya-Mir-9-P12-v1  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P12-v1  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P12  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)		 KQ972687: 113154-113211 [-] Ensembl
Seed UUUGGUA
Precursor
(pre-Mir +30nt flank)		 
GGUUCCAACAGGUGGGGGCCGAUUUUGUUACUUUGGUAAUUUAGCGUUUGUGAUUUUAUUUGAGUCAUAAAGCUAGAUUACCAAAGCAAUGCGGUUGGCAUUGCGUCGUGGAGAUUGG
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Structure
        10          20        30        40        50         
GGUUCCAACAGGUGGGG--|     UU    A               G       UUUUA 
                   GCCGAU  UGUU CUUUGGUAAUUUAGC UUUGUGA     \
                   CGGUUG  GUAA GAAACCAUUAGAUCG AAAUACU     U
GGUUAGAGGUGCUGCGUUA^     GC    C               -       GAGUU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-9-P12_5p
mirBase accessionMIMAT0019134
Sequence 
0- CUUUGGUAAUUUAGCGUUUGUGA -23
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Co-mature sequence

Tca-Mir-9-P12_3p
mirBase accessionMIMAT0019135
Sequence 
36- AUAAAGCUAGAUUACCAAAGCA -58
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