Mir-1677-P4

MirGeneDB ID

Tgu-Mir-1677-P4

Family name

MIR-1677 (all species)

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-1784

Paralogues

Tgu-Mir-1677-P1 Tgu-Mir-1677-P2 Tgu-Mir-1677-P5 Tgu-Mir-1677-P6

Orthologues

Ami-Mir-1677-o4 Cli-Mir-1677-P4 Cpi-Mir-1677-P4 Gga-Mir-1677-P4

Node of Origin (locus)

Archelosauria

Node of Origin (family)

Diapsida

Genome context
(TaeGut1_add)

3: 82428447-82428504 [+] UCSC Ensembl

Seed

GACUUAA

Precursor
(pre-Mir +30nt flank)

ACUACUGUGCACUGAUUUCUUGGGGCCCAAUUCUGCUCUUAUUGAAAUCAGUGAGAGUCCUGCCAUUGACUUAAAUGGGAGCAGAAUUGGGACCUAAGAGGACAUAUCCAGUUCUGGG

Get precursor sequence

Structure

        10          20        30        40        50        
ACUACUGUGCACUGAUU--|      G                  G  A     GAGAG 
                   UCUUGGG CCCAAUUCUGCUCUUAUU AA UCAGU     U
                   AGAAUCC GGGUUAAGACGAGGGUAA UU AGUUA     C
GGGUCUUGACCUAUACAGG^      A                  A  C     CCGUC 
      110       100        90        80        70        60