| MirGeneDB ID | Xtr-Mir-725 |
|---|
| Family name |
MIR-725 (all species) |
|---|
| Species |
Tropical clawed frog (Xenopus tropicalis) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Cmi-Mir-725
Cpi-Mir-725
Dre-Mir-725
Gmo-Mir-725
Lch-Mir-725
Loc-Mir-725
Mal-Mir-725
Sto-Mir-725
Tni-Mir-725
Xla-Mir-725-P1
Xla-Mir-725-P2
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Gnathostomata
|
|---|
Genome context
(xenTro9_add) |
chr5: 99035854-99035909 [+]
UCSC
Ensembl
|
|---|
| Seed |
UCAGUCA |
|---|
Precursor
(pre-Mir +30nt flank) |
UGGGGCUUAUCUUCAGAGGGUUUUACGUUCCACUUGAAACUGUGCCUGUUGUGAAAAGCAGCAUUUCAGUCACGGUUUUUGGUGGAGUGUGAAUCUCUCAGCAGCAGACCGAGAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGGGCUUAUCUUCAGA--| U U C UU GAAA
GGG UUUACGUUCCACU GAAACUGUG CUG GU A
CUC AAGUGUGAGGUGG UUUUGGCAC GAC UA G
GAAGAGCCAGACGACGACU^ U U U UU CGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Xtr-Mir-725_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CACUUGAAACUGUGCCUGUUGU -22
Get sequence
|
|---|
| Mature sequence |
Xtr-Mir-725_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
34- UUCAGUCACGGUUUUUGGUGGA -56
Get sequence
|
|---|
