Mir-145

MirGeneDB ID

Aca-Mir-145

Family name

MIR-145 (all species)

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-145

Paralogues

Orthologues

Ami-Mir-145 Bta-Mir-145 Cfa-Mir-145 Cja-Mir-145 Cli-Mir-145 Cmi-Mir-145 Cpi-Mir-145 Cpo-Mir-145 Dno-Mir-145 Dre-Mir-145 Ebu-Mir-145 Eca-Mir-145 Ete-Mir-145 Gga-Mir-145 Gja-Mir-145 Gmo-Mir-145 Hsa-Mir-145 Laf-Mir-145 Lch-Mir-145 Loc-Mir-145 Mal-Mir-145 Mdo-Mir-145 Mml-Mir-145 Mmr-Mir-145 Mmu-Mir-145 Mun-Mir-145 Neu-Mir-145 Oan-Mir-145 Ocu-Mir-145 Pab-Mir-145 Pbv-Mir-145 Pma-Mir-145 Rno-Mir-145 Sha-Mir-145 Spt-Mir-145 Sto-Mir-145 Tgu-Mir-145 Xla-Mir-145-P1 Xla-Mir-145-P2 Xtr-Mir-145

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

2: 122657708-122657767 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-145)

Mir-145 2: 122657708-122657767 [-] UCSC Ensembl
Mir-143 2: 122658943-122658997 [-] UCSC Ensembl

Seed

UCCAGUU

Precursor
(pre-Mir +30nt flank)

UCUCAGACCACCCUUUACUGUGUCCUCGGGGUCCAGUUUUCCCAGGAAUCCCUUAGAUGAUAAGAGGGGGAUUCCUGGAAAUACUGUUCUUGGGGUCAUGGCUCAGCAACUGGUGAUGGU

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Structure

        10          20        30        40        50          
UCUCAGACCACCCUUUA--|    U        UC    U  C            UAGAUG 
                   CUGUG CCUCGGGG  CAGU UU CCAGGAAUCCCU      \
                   GGUAC GGGGUUCU  GUCA AA GGUCCUUAGGGG      A
UGGUAGUGGUCAACGACUC^    U        U-    U  A            GAGAAU 
.       110       100        90         80        70

Deep sequencing

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Comment

There is a second Dicer cut -2 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sk	Ta	Ta	To	Wh

Mature sequence

Aca-Mir-145_5p

mirBase accession

MIMAT0021773

Sequence

0- GUCCAGUUUUCCCAGGAAUCCCU -23

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Star sequence

Aca-Mir-145_3p*

mirBase accession

MIMAT0021774

Sequence

38- GGAUUCCUGGAAAUACUGUUCU -60

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