MirGeneDB 3.0
MirGeneDB ID

Aca-Mir-5436

Family name MIR-5436 (all species)
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-5436
Paralogues
Orthologues
Node of Origin (locus) A. carolinensis
Node of Origin (family) A. carolinensis
Genome context
(anoCar2)		 4: 151844946-151845004 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-5436)		 Mir-1-P3 4: 151823211-151823271 [+] UCSC Ensembl
Mir-5436 4: 151844946-151845004 [+] UCSC Ensembl
Mir-133-P3-v1 4: 151864300-151864359 [+] UCSC Ensembl
Mir-133-P3-v2 4: 151864300-151864359 [+] UCSC Ensembl
Seed GCUCGCU
Precursor
(pre-Mir +30nt flank)		 
GGACCCCCUGUCGUAUUGCUGGCCUCAAGCAGCUCGCUGGCAGAGACUUUCUGGUGAAGUCAGACAGCAAGUCUUUGCCAGGGAGCUGCUUGUGGUCAGUGAUGCAAUGGUGGCAGCCC
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Structure
        10          20        30        40        50         
GGACCCCCUGUCGUAUU--|      U          G             U  GGUGAA 
                   GCUGGCC CAAGCAGCUC CUGGCAGAGACUU CU      \
                   UGACUGG GUUCGUCGAG GACCGUUUCUGAA GA      G
CCCGACGGUGGUAACGUAG^      U          G             C  CAGACU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Sk Ta Ta To Wh
Mature sequence

Aca-Mir-5436_5p
mirBase accessionMIMAT0022057
Sequence 
0- AGCUCGCUGGCAGAGACUUUCU -22
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Star sequence

Aca-Mir-5436_3p*
mirBase accessionMIMAT0022058
Sequence 
37- CAAGUCUUUGCCAGGGAGCUGC -59
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