| MirGeneDB ID | Ami-Mir-1397 |
|---|
| Family name |
MIR-1397 (all species) |
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| Species |
American alligator (Alligator mississippiensis) |
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| MiRBase ID |
ami-mir-1397
|
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| Paralogues |
|
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| Orthologues |
Aca-Mir-1397
Cpi-Mir-1397
Gga-Mir-1397
Gja-Mir-1397
Neu-Mir-1397
Oan-Mir-1397
Pbv-Mir-1397
Sha-Mir-1397
Spt-Mir-1397
Tgu-Mir-1397
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| Node of Origin (locus) |
Amniota
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| Node of Origin (family) |
Amniota
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Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017709083.1: 1016086-1016143 [+]
UCSC
|
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| Seed |
GCAUUGC |
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Precursor
(pre-Mir +30nt flank) |
UAAGUCACUGACAGAGUGCGAUGUGUGCAUUGCAUUGCGACGGGUUACAUCACUGGUCGUAACAUGAUGUAACCCAACGCAGCAUGAUGUAAGCGUCGUGAUACAUUGGAAACUUAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAAGUCACUGACAGAGU--| G CA AC CUGGU
GCGAUGU UGCAUUG UUGCG GGGUUACAUCA C
UGCUGCG AUGUAGU GACGC CCCAAUGUAGU G
AAAUUCAAAGGUUACAUAG^ A AC AA ACAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Ami-Mir-1397_5p |
| mirBase accession | MIMAT0038314 |
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| Sequence |
0- UGCAUUGCGACGGGUUACAUCA -22
Get sequence
|
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| Star sequence |
Ami-Mir-1397_3p* |
| mirBase accession | MIMAT0038315 |
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| Sequence |
36- AUGUAACCCAACGCAGCAUGAU -58
Get sequence
|
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