MirGeneDB 3.0
MirGeneDB ID

Asu-Mir-279-o24

Family name MIR-279 (all species)
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-279a
Paralogues Asu-Mir-279-o22  Asu-Mir-279-o23  Asu-Mir-279-o25  Asu-Mir-279-o26 
Orthologues Agr-Mir-279  Ava-Mir-279-P24a  Ava-Mir-279-P24b  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) A.suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold287: 267836-267891 [-]
Clustered miRNAs
(< 50kb from Mir-279-o24)		 Mir-791 Scaffold287: 265477-265534 [-]
Mir-2-o8 Scaffold287: 267253-267310 [-]
Mir-2-P11 Scaffold287: 267429-267487 [-]
Mir-279-o24 Scaffold287: 267836-267891 [-]
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
UCACAUCGUGCUGCAUUGCCACAUUCUUUGCUGGGCAUGGCUCUAUGUCAUGCUAUCUAGUUUCAUGACUAGAUCCAUACUCAGCUAGGGGUGUGGCUCAGGCAGCUACGUUUAGA
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Structure
        10          20        30        40        50        
UCACAUCGUGCUGCAUU--|          U      C    C    U      CUAUC 
                   GCCACAUUCUU GCUGGG AUGG UCUA GUCAUG     \
                   CGGUGUGGGGA CGACUC UACC AGAU CAGUAC     U
AGAUUUGCAUCGACGGACU^          U      A    U    -      UUUGA 
    110       100        90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of nematodes and how the Caenorhabditis Mir-279s relate to Ascaris Mir-279s and thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-279-o24_5p*
mirBase accessionMIMAT0021511
Sequence 
0- CUGGGCAUGGCUCUAUGUCAUG -22
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Mature sequence

Asu-Mir-279-o24_3p
mirBase accessionMIMAT0021512
Sequence 
35- UGACUAGAUCCAUACUCAGCU -56
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