MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-36-P28a

Family name MIR-36 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-36-P26a  Ava-Mir-36-P26b  Ava-Mir-36-P27  Ava-Mir-36-P28b  Ava-Mir-36-P29a  Ava-Mir-36-P29b 
Orthologues Agr-Mir-36  Asu-Mir-36-o28  Bge-Mir-36  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  War-Mir-36 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075493.1: 7621756-7621814 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-36-P28a)		 Mir-36-P28a CP075493.1: 7621756-7621814 [-] Ensembl
Mir-36-P26a CP075493.1: 7622005-7622069 [-] Ensembl
Mir-279-P21b CP075493.1: 7622130-7622191 [-] Ensembl
Seed CACCGGG
Precursor
(pre-Mir +30nt flank)		 
CGAGCCGGAAGUAUUUCAAUUAUUUGGUAGGAAGAUUGCAUAGUCGGUUACUUUGAUAUUUAUGCAGUCACCGGGUAUACACUCUUCCUUUAUCUGGCUCUUCACCGUCGUUAAUCAUC
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Structure
        10        20          30        40        50         
CGAGCCGGAAGUAUUUCAAUUAUUU   --|      U  C   G     U   UUGAUA 
                         GGU  AGGAAGA UG AUA UCGGU ACU      \
                         CUA  UCCUUCU AC UAU GGCCA UGA      U
CUACUAAUUGCUGCCACUUCUCGGU   UU^      C  A   G     C   CGUAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To
Star sequence

Ava-Mir-36-P28a_5p*
mirBase accessionNone
Sequence 
0- GAAGAUUGCAUAGUCGGUUACU -22
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Mature sequence

Ava-Mir-36-P28a_3p
mirBase accessionNone
Sequence 
37- UCACCGGGUAUACACUCUUCCU -59
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