Mir-36-o28

MirGeneDB ID

Asu-Mir-36-o28

Family name

MIR-36 (all species)

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-36b

Paralogues

Asu-Mir-36-o27 Asu-Mir-36-o29-v1 Asu-Mir-36-o30 Asu-Mir-36-o31 Asu-Mir-36-o32

Orthologues

Agr-Mir-36 Ava-Mir-36-P28a Ava-Mir-36-P28b Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

A.suum

Node of Origin (family)

Protostomia

Genome context
(ASU_PRJNA80881_plustraces)

Scaffold800: 98613-98672 [-]

Clustered miRNAs
(< 50kb from Mir-36-o28)

Mir-5350-P6 Scaffold800: 97547-97610 [-]
Mir-279-o22 Scaffold800: 97897-97956 [-]
Mir-2-o10 Scaffold800: 98049-98111 [-]
Mir-36-o28 Scaffold800: 98613-98672 [-]
Mir-2-o6 Scaffold800: 124302-124361 [+]

Seed

CACCGGG

Precursor
(pre-Mir +30nt flank)

GCUUGUUGCUGUGCUUUCAAUGUGGCCGAUCGUGAGUGUUUGCGACGGUUAGCGUCUGGUAUCGGUGCUCACCGGGUGAACAUUCAUUAUCGGCCCAUUGGCUUUGCUGGCUAAUAGCUG

Get precursor sequence

Structure

        10           20        30        40        50          
GCUUGUUGCUGUGCUUU---|    U       C         UG GA    U   GUCUGG 
                    CAAUG GGCCGAU GUGAGUGUU  C  CGGU AGC      \
                    GUUAC CCGGCUA UACUUACAA  G  GCCA UCG      U
GUCGAUAAUCGGUCGUUUCG^    -       U         GU G-    C   UGGCUA 
.       110       100         90        80         70