| MirGeneDB ID | Bta-Mir-296 |
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| Family name |
MIR-296 (all species) |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-296
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| Paralogues |
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| Orthologues |
Cfa-Mir-296
Cja-Mir-296
Cpo-Mir-296
Dno-Mir-296
Eca-Mir-296
Hsa-Mir-296
Laf-Mir-296
Mml-Mir-296
Mmr-Mir-296
Mmu-Mir-296
Pab-Mir-296
Rno-Mir-296
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037340.1: 57550938-57550994 [+]
UCSC
Ensembl
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| Seed |
GGGUUGG |
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Precursor
(pre-Mir +30nt flank) |
UGUGGAAAGUGACCAUGAAGGACCCUUCCGGAGGGCCCCCCCCAAUCCUGUUGUGCUUGGUUCAGAGGGUUGGGCGGAGGCUUUCCUGAAGGGUCUGAGAGAGCAGCACCCACAGGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGUGGAAAGUGACCAUGAA-- C C -| GUUGUGC
GGACCCUUC GGAGGGCC CC CCCAAUCCU U
UCUGGGAAG CCUUUCGG GG GGGUUGGGA U
CGGACACCCACGACGAGAGAG U A C^ GACUUGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Mir-296 is arm-switched and the Drosha cut is shifted -1 relative to the other mammals analyzed. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Star sequence |
Bta-Mir-296_5p* |
| mirBase accession | MIMAT0026918 |
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| Sequence |
0- GAGGGCCCCCCCCAAUCCUGU -21
Get sequence
|
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| Proposed targets |
TargetScanVert: bta-miR-296-5p
|
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| Mature sequence |
Bta-Mir-296_3p |
| mirBase accession | MIMAT0009273 |
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| Sequence |
35- AGGGUUGGGCGGAGGCUUUCCU -57
Get sequence
|
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| Proposed targets |
TargetScanVert: bta-miR-296-3p
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