Mir-362-P4

MirGeneDB ID

Bta-Mir-362-P4

Family name

MIR-362 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-362

Paralogues

Bta-Mir-362-P1-v1 Bta-Mir-362-P3a-v1 Bta-Mir-362-P3b-v1 Bta-Mir-362-P6

Orthologues

Cfa-Mir-362-P4 Cja-Mir-362-P4 Cpo-Mir-362-P4 Dno-Mir-362-P4 Eca-Mir-362-P4 Ete-Mir-362-P4 Hsa-Mir-362-P4 Laf-Mir-362-P4 Mml-Mir-362-P4 Mmr-Mir-362-P4 Mmu-Mir-362-P4 Ocu-Mir-362-P4 Pab-Mir-362-P4 Rno-Mir-362-P4

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 87736674-87736732 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P4)

Mir-188-P1 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P2 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P1-v1 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P1-v2 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P3a-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P3b-v1 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-362-P3b-v2 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87742037-87742096 [+] UCSC Ensembl

Seed

AUCCUUG

Precursor
(pre-Mir +30nt flank)

CCUGAGCCUUCUUGUCUGCUCCCCCUCUCGAAUCCUUGGAACCUAGGUGUGAGUGCUGUUCUAGUGCAACACACCUAUUCAAGGAUUCAAAGAGGCUGAGCCUGGUCUACGUGGAGAAG

Get precursor sequence

Structure

        10         20         30        40        50        60 
CCUGAGCCUUCUUGUCU-    CC     C-|          ACC        AG   UGUU 
                  GCUC  CCUCU  GAAUCCUUGGA   UAGGUGUG  UGC    \
                  CGAG  GGAGA  CUUAGGAACUU   AUCCACAC  ACG    C
GAAGAGGUGCAUCUGGUC    UC     AA^          ---        A-   UGAU 
       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-362-P4_5p

mirBase accession

MIMAT0009298

Sequence

0- AAUCCUUGGAACCUAGGUGUGAGUGC -26

Get sequence

Proposed targets

TargetScanVert: bta-miR-362-5p

Co-mature sequence

Bta-Mir-362-P4_3p

mirBase accession

MIMAT0012548

Sequence

37- AACACACCUAUUCAAGGAUUCA -59

Get sequence

Proposed targets

TargetScanVert: bta-miR-362-3p